-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               20.8
- User:                                                              lsand039
- Dataset:                                  20-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   20.txt
- Observation count:                                                      377
- Number of variables:                                                     21
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      20.8static.report.2016.09.01.20.19.28.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            8.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775568112
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 560.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   68843750
         Time       10.0 m (2.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   137241250
         Time       20.0 m (4.1% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   204277750
         Time       30.0 m (6.2% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   272203250
         Time       40.0 m (8.3% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   343254500
         Time       50.0 m (10.4% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   416462250
         Time       1.0 h (12.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   489289000
         Time       1.17 h (14.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   563052750
         Time       1.33 h (16.6% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   636572250
         Time       1.5 h (18.7% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   710474250
         Time       1.67 h (20.8% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   784708000
         Time       1.83 h (22.9% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   858303750
         Time       2.0 h (25.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -3310.8639, first found at iteration 40612
21
 0 2 9 16
 1 2 4 17
 2 2 13 17
 3 2 14 19
 4 2 11 18
 5 2 13 16
 6 2 3 11
 7 2 3 20
 8 2 0 13
 9 2 3 19
10 0
11 2 9 16
12 2 6 17
13 2 10 14
14 1 10
15 2 2 17
16 2 14 18
17 2 11 13
18 2 3 13
19 2 10 13
20 2 6 17

-----------------------------------------------------------------------------


Status:  Networks   931902250
         Time       2.17 h (27.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1005136250
         Time       2.33 h (29.1% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1079213000
         Time       2.5 h (31.2% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1156933250
         Time       2.67 h (33.3% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1237612750
         Time       2.83 h (35.4% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1317666000
         Time       3.0 h (37.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1398568000
         Time       3.17 h (39.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1479226250
         Time       3.33 h (41.6% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1559670500
         Time       3.5 h (43.7% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1640620500
         Time       3.67 h (45.8% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1720717000
         Time       3.83 h (47.9% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1802430500
         Time       4.0 h (50.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -3310.8639, first found at iteration 40612
21
 0 2 9 16
 1 2 4 17
 2 2 13 17
 3 2 14 19
 4 2 11 18
 5 2 13 16
 6 2 3 11
 7 2 3 20
 8 2 0 13
 9 2 3 19
10 0
11 2 9 16
12 2 6 17
13 2 10 14
14 1 10
15 2 2 17
16 2 14 18
17 2 11 13
18 2 3 13
19 2 10 13
20 2 6 17

-----------------------------------------------------------------------------


Status:  Networks   1914629250
         Time       4.17 h (52.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2029516500
         Time       4.33 h (54.1% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2145023750
         Time       4.5 h (56.2% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2258139250
         Time       4.67 h (58.3% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2371641500
         Time       4.83 h (60.4% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2486297000
         Time       5.0 h (62.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2601295250
         Time       5.17 h (64.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2715116500
         Time       5.33 h (66.6% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2830667000
         Time       5.5 h (68.7% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   2947264750
         Time       5.67 h (70.8% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3059962000
         Time       5.83 h (72.9% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3174904750
         Time       6.0 h (75.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -3310.8639, first found at iteration 40612
21
 0 2 9 16
 1 2 4 17
 2 2 13 17
 3 2 14 19
 4 2 11 18
 5 2 13 16
 6 2 3 11
 7 2 3 20
 8 2 0 13
 9 2 3 19
10 0
11 2 9 16
12 2 6 17
13 2 10 14
14 1 10
15 2 2 17
16 2 14 18
17 2 11 13
18 2 3 13
19 2 10 13
20 2 6 17

-----------------------------------------------------------------------------


Status:  Networks   3290125000
         Time       6.17 h (77.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3405527750
         Time       6.33 h (79.1% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3521574500
         Time       6.5 h (81.2% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3635449000
         Time       6.67 h (83.3% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3748986250
         Time       6.83 h (85.4% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3863770250
         Time       7.0 h (87.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   3978387750
         Time       7.17 h (89.5% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   4092700500
         Time       7.33 h (91.6% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   4214051500
         Time       7.5 h (93.7% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   4347405500
         Time       7.67 h (95.8% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   4475968750
         Time       7.83 h (97.9% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   4613840750
         Time       8.0 h (100.0% of max. 8.0 h)
         Re-anneals  4 (0.0% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -3310.8639, first found at iteration 40612
21
 0 2 9 16
 1 2 4 17
 2 2 13 17
 3 2 14 19
 4 2 11 18
 5 2 13 16
 6 2 3 11
 7 2 3 20
 8 2 0 13
 9 2 3 19
10 0
11 2 9 16
12 2 6 17
13 2 10 14
14 1 10
15 2 2 17
16 2 14 18
17 2 11 13
18 2 3 13
19 2 10 13
20 2 6 17


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 4613840750
  Total time used: 8.0 h
  High score: -3310.8639, first found at iteration 40612
  Number of re-anneals: 4

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    1537963697
  Deletions -- proposed:    1537900118
  Reversals -- proposed:    1537976934

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  1537963697,  acyclic:  976058011
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  1537976934,  acyclic:  1012422610

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          1330157902
  Scores (cache)            placed         fetched        
      with 0 parents:       21             76925613       
      with 1 parents:       420            2342019172     
      with 2 parents:       93317180       130997186      
      with 3 parents:       1144288423     587376854      
      with 4 parents:       92551580       71327064       
      with 5 parents:       278            20             

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  976058011,  better score:  8609,  other accepted:  3970
  Deletions -- considered:  1537900118,  better score:  4076,  other accepted:  8463
  Reversals -- considered:  1012422610,  better score:  76874952,  other accepted:  29547
  Average permissivity:     0.0

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -3310.8639, found by thread 1
21
 0 2 9 16
 1 2 4 17
 2 2 13 17
 3 2 14 19
 4 2 11 18
 5 2 13 16
 6 2 3 11
 7 2 3 20
 8 2 0 13
 9 2 3 19
10 0
11 2 9 16
12 2 6 17
13 2 10 14
14 1 10
15 2 2 17
16 2 14 18
17 2 11 13
18 2 3 13
19 2 10 13
20 2 6 17

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (16,0) ->   (0,0)   .3223
Influence score for   (9,0) ->   (0,0)   .3311
Influence score for  (17,0) ->   (1,0)   -.3290
Influence score for   (4,0) ->   (1,0)   .4183
Influence score for  (17,0) ->   (2,0)   .3726
Influence score for  (13,0) ->   (2,0)   .3307
Influence score for  (19,0) ->   (3,0)   .0000
Influence score for  (14,0) ->   (3,0)   .0000
Influence score for  (18,0) ->   (4,0)   -.3164
Influence score for  (11,0) ->   (4,0)   -.3331
Influence score for  (16,0) ->   (5,0)   .0000
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for  (11,0) ->   (6,0)   .0595
Influence score for   (3,0) ->   (6,0)   .1664
Influence score for  (20,0) ->   (7,0)   .0000
Influence score for   (3,0) ->   (7,0)   .0000
Influence score for  (13,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.0670
Influence score for  (19,0) ->   (9,0)   .0000
Influence score for   (3,0) ->   (9,0)   .3084
Influence score for  (16,0) ->  (11,0)   .0000
Influence score for   (9,0) ->  (11,0)   .4975
Influence score for  (17,0) ->  (12,0)   .3817
Influence score for   (6,0) ->  (12,0)   .1641
Influence score for  (14,0) ->  (13,0)   .0000
Influence score for  (10,0) ->  (13,0)   .1811
Influence score for  (10,0) ->  (14,0)   .0000
Influence score for  (17,0) ->  (15,0)   .3311
Influence score for   (2,0) ->  (15,0)   .3311
Influence score for  (18,0) ->  (16,0)   .0000
Influence score for  (14,0) ->  (16,0)   .0000
Influence score for  (13,0) ->  (17,0)   .0000
Influence score for  (11,0) ->  (17,0)   .0000
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (3,0) ->  (18,0)   .0741
Influence score for  (13,0) ->  (19,0)   .3307
Influence score for  (10,0) ->  (19,0)   .3307
Influence score for  (17,0) ->  (20,0)   .1645
Influence score for   (6,0) ->  (20,0)   .0000

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -3310.8639\nProject: 20.8\nUser: lsand039\nDataset: 20-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];

    9->0;
    16->0;
    4->1;
    17->1;
    13->2;
    17->2;
    14->3;
    19->3;
    11->4;
    18->4;
    13->5;
    16->5;
    3->6;
    11->6;
    3->7;
    20->7;
    0->8;
    13->8;
    3->9;
    19->9;
    9->11;
    16->11;
    6->12;
    17->12;
    10->13;
    14->13;
    10->14;
    2->15;
    17->15;
    14->16;
    18->16;
    11->17;
    13->17;
    3->18;
    13->18;
    10->19;
    13->19;
    6->20;
    17->20;
}

